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Small-Molecule Inhibitors of the m7G-RNA Writer METTL1

Authors:
F. Nai; M.P. Flores-Espinoza; A. Invernizzi; P.A. Vargas-Rosales; O. Bobileva; M. Herok; A. Caflisch

Journal: ACS Bio. Med. Chem. Au
Year: 2023
Volume: X
DOI: https://doi.org/10.1021/acsbiomedchemau.3c00030
Type of Publication: Journal Article

Keywords:
docking; Drug Discovery; enzymatic assay; epitranscriptomics; m7G writer; MD simulation

Abstract:

We discovered the first inhibitors of the m7G-RNA writer METTL1 by high-throughput docking and an enzymatic assay based on luminescence. Eleven compounds, which belong to three different chemotypes, show inhibitory activity in the range 40-300uM Two adenine derivatives identified by docking have very favorable ligand efficiency of 0.34 and 0.31 kcal/mol per non-hydrogen atom, respectively. Molecular dynamics simulations provide evidence that the inhibitors compete with the binding of the cosubstrate S-adenosylmethionine to METTL1. We also present a soakable crystal form that was used to determine the structure of the complex of METTL1 with sinefungin at a resolution of 1.85A.