Author
Keywords
Abstract

The assumption that similar structures have similar folding probabilities (pfold) leads naturally to a procedure to evaluate pfold for every snapshot saved along an equilibrium folding-unfolding trajectory of a structured peptide or protein. The procedure utilizes a structurally homogeneous clustering and does not require any additional simulation. It can be used to detect multiple folding pathways as shown for a three-stranded antiparallel β-sheet peptide investigated by implicit solvent molecular dynamics simulations.

Year of Publication
2005
Journal
Journal of Chemical Physics
Volume
122
Issue
18
Number of Pages
184901
Date Published
2005 May 8
Type of Article
Research Article
ISSN Number
0021-9606
DOI
10.1063/1.1893753
Alternate Journal
J Chem Phys
PMID
15918759
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