Interlandi, G., Wetzel, S. K., Settanni, G., Plückthun, A., & Caflisch, A. (2008). Characterization and further stabilization of designed ankyrin repeat proteins by combining molecular dynamics simulations and experiments. Journal of Molecular Biology, 375(3), 837-854. https://doi.org/10.1016/j.jmb.2007.09.042 (Original work published)

Seeber, M., Cecchini, M., Rao, F., Settanni, G., & Caflisch, A. (2007). Wordom: A program for efficient analysis of molecular dynamics simulations. Bioinformatics, 23(19), 2625-2627. https://doi.org/10.1093/bioinformatics/btm378 (Original work published)

Rao, F., Settanni, G., & Caflisch, A. (2007). Estimation of folding probabilities and Phi values from molecular dynamics simulations of reversible peptide folding. In Y. Bai & R. Nussinov (Eds.), Protein Folding Protocols (pp. 225-249). Totowa, NJ: Humana Press, Inc. https://doi.org/10.1385/1-59745-189-4:225

Interlandi, G., Settanni, G., & Caflisch, A. (2006). Unfolding transition state and intermediates of the tumor suppressor p16INK4a investigated by molecular dynamics simulations. Proteins: Structure, Function, and Bioinformatics, 64(1), 178-192. https://doi.org/10.1002/prot.20953 (Original work published)

Rao, F., Settanni, G., Guarnera, E., & Caflisch, A. (2005). Estimation of protein folding probability from equilibrium simulations. Journal of Chemical Physics, 122(18), 184901. https://doi.org/10.1063/1.1893753 (Original work published)

Settanni, G., Rao, F., & Caflisch, A. (2005). Phi-value analysis by molecular dynamics simulations of reversible folding. Proceedings of the National Academy of Sciences of the United States of America, 102(3), 628-633. https://doi.org/10.1073/pnas.0406754102 (Original work published)

Uk, B., Taufer, M., Stricker, T., Settanni, G., Cavalli, A., & Caflisch, A. (2003). Combining task- and data parallelism to speed up protein folding on a desktop grid platform. Proceedings of the 3rd IEEE ACM International Symposium on Cluster Computing and the Grid (CCGrid 2003). Presented at the. Tokyo: IEEE. https://doi.org/10.1109/CCGRID.2003.1199374

Settanni, G., Gsponer, J., & Caflisch, A. (2004). Formation of the folding nucleus of an SH3 domain investigated by loosely coupled molecular dynamics simulations. Biophysical Journal, 86(3), 1691-1701. https://doi.org/10.1016/S0006-3495(04)74238-1 (Original work published 2004)