@article{bibcite_158, keywords = {Models, Molecular, Peptides, Protein Folding, Protein Structure, Secondary, Monte Carlo Method, Proteins, Models, Theoretical, Models, Statistical, Time Factors, Biophysics, Chemistry, Physical, Cluster Analysis, Probability}, author = {F. Rao and G. Settanni and E. Guarnera and A. Caflisch}, title = {Estimation of protein folding probability from equilibrium simulations}, abstract = {
The assumption that similar structures have similar folding probabilities (pfold) leads naturally to a procedure to evaluate pfold for every snapshot saved along an equilibrium folding-unfolding trajectory of a structured peptide or protein. The procedure utilizes a structurally homogeneous clustering and does not require any additional simulation. It can be used to detect multiple folding pathways as shown for a three-stranded antiparallel \β-sheet peptide investigated by implicit solvent molecular dynamics simulations.
}, year = {2005}, journal = {Journal of Chemical Physics}, volume = {122}, pages = {184901}, month = {2005 May 8}, issn = {0021-9606}, doi = {10.1063/1.1893753}, language = {eng}, }