Langini, C., Caflisch, A., & Vitalis, A. (2017). The ATAD2 bromodomain binds different acetylation marks on the histone H4 in similar fuzzy complexes. The Journal of Biological Chemistry, 292(40), 16734-16745. https://doi.org/10.1074/jbc.M117.786350 (Original work published)
Huang, D., & Caflisch, A. (2015). The roles of the conserved tyrosine in the β2-α2 loop of the prion protein. Prion, 9(6), 412-419. https://doi.org/10.1080/19336896.2015.1115944
Zhao, H., & Caflisch, A. (2014). Discovery of dual ZAP70 and Syk kinases inhibitors by docking into a rare C-helix-out conformation of Syk. Bioorganic & Medicinal Chemistry Letters, 24(6), 1523-1527. https://doi.org/10.1016/j.bmcl.2014.01.083 (Original work published)
Steiner, S., Magno, A., Huang, D., & Caflisch, A. (2013). Does bromodomain flexibility influence histone recognition? FEBS Letters, 587(14), 2158-2163. https://doi.org/10.1016/j.febslet.2013.05.032 (Original work published)
Kalgin, I. V., Caflisch, A., Chekmarev, S. F., & Karplus, M. (2013). New insights into the folding of a β-sheet miniprotein in a reduced space of collective hydrogen bond variables: Application to a hydrodynamic analysis of the folding flow. The Journal of Physical Chemistry B, 117(20), 6092-6105. https://doi.org/10.1021/jp401742y (Original work published)
Steiner, S., & Caflisch, A. (2012). Peptide binding to the PDZ3 domain by conformational selection. Proteins: Structure, Function, and Bioinformatics, 80(11), 2562-2572. https://doi.org/10.1002/prot.24137 (Original work published 2012)
Alfarano, P., Varadamsetty, G., Ewald, C., Parmeggiani, F., Pellarin, R., Zerbe, O., … Caflisch, A. (2012). Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy. Protein Science, 21(9), 1298-1314. https://doi.org/10.1002/pro.2117 (Original work published 2012)
Waldauer, S. A., Hassan, S., Paoli, B., Donaldson, P. M., Pfister, R., Hamm, P., … Pellarin, R. (2012). Photocontrol of reversible amyloid formation with a minimal-design peptide. The Journal of Physical Chemistry B, 116(30), 8961-8973. https://doi.org/10.1021/jp305311z (Original work published)
Convertino, M., Vitalis, A., & Caflisch, A. (2011). Disordered binding of small molecules to Aβ(12-28). The Journal of Biological Chemistry, 286(48), 41578-41588. https://doi.org/10.1074/jbc.M111.285957 (Original work published)
Zheng, W., Qi, B., Rohrdanz, M. A., Caflisch, A., Dinner, A. R., & Clementi, C. (2011). Delineation of folding pathways of a β-sheet miniprotein. The Journal of Physical Chemistry B, 115(44), 13065-13074. https://doi.org/10.1021/jp2076935 (Original work published)