Link to full page (citation export, more details):

Wordom: A program for efficient analysis of molecular dynamics simulations

Full Text PDF:

PDF icon seeber07.pdf

M. Seeber; M. Cecchini; F. Rao; G. Settanni; A. Caflisch

Journal: Bioinformatics
Year: 2007
Volume: 23
Issue: 19
Pages: 2625-2627
DOI: 10.1093/bioinformatics/btm378
Type of Publication: Journal Article

Algorithms; Computer Simulation; Database Management Systems; Databases, Protein; Information Storage and Retrieval; Models, Chemical; Models, Molecular; Protein Conformation; Proteins; Software; User-Computer Interface


Wordom is a versatile program for manipulation of molecular dynamics trajectories and efficient analysis of simulations. Original tools in Wordom include a procedure to evaluate significance of sampling for principal component analysis as well as modules for clustering multiple conformations and evaluation of order parameters for folding and aggregation. The program was developed with special emphasis on user-friendliness, effortless addition of new modules and efficient handling of large sets of trajectories.