Wordom: A program for efficient analysis of molecular dynamics simulations
| Title | Wordom: A program for efficient analysis of molecular dynamics simulations |
| Publication Type | Journal Article |
| Year of Publication | 2007 |
| Authors | Seeber M., Cecchini M., Rao F., Settanni G., Caflisch A. |
| Journal | Bioinformatics |
| Volume | 23 |
| Issue | 19 |
| Pagination | 2625-2627 |
| Date Published | 2007 Oct 1 |
| Type of Article | Research Article |
| Keywords | Algorithms, Computer Simulation, Database Management Systems, Databases, Protein, Information Storage and Retrieval, Models, Chemical, Models, Molecular, Protein Conformation, Proteins, Software, User-Computer Interface |
| Abstract | Wordom is a versatile program for manipulation of molecular dynamics trajectories and efficient analysis of simulations. Original tools in Wordom include a procedure to evaluate significance of sampling for principal component analysis as well as modules for clustering multiple conformations and evaluation of order parameters for folding and aggregation. The program was developed with special emphasis on user-friendliness, effortless addition of new modules and efficient handling of large sets of trajectories. |
| DOI | 10.1093/bioinformatics/btm378 |
| pubindex | 0087 |
| Alternate Journal | Bioinformatics |
| PubMed ID | 17717034 |
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