Biblio

Found 11 results
Filters: Author is Ferrara, P.  [Clear All Filters]
2002
Gorfe A.A, Ferrara P., Caflisch A., Marti D.N, Bosshard H.R, Jelesarov I..  2002.  Calculation of protein ionization equilibria with conformational sampling: pKa of a model leucine zipper, GCN4 and barnase. Proteins: Structure, Function, and Bioinformatics. 46(1):41-60.
Ferrara P., Apostolakis J., Caflisch A..  2002.  Evaluation of a fast implicit solvent model for molecular dynamics simulations.. Proteins: Structure, Function, and Bioinformatics. 46(1):24-33.
Cavalli A., Ferrara P., Caflisch A..  2002.  Weak temperature dependence of the free energy surface and folding pathways of structured peptides.. Proteins: Structure, Function, and Bioinformatics. 47(3):305-314.
2001
Gsponer J., Ferrara P., Caflisch A..  2001.  Flexibility of the murine prion protein and its Asp178Asn mutant investigated by molecular dynamics simulations. Journal of Molecular Graphics and Modelling. 20(2):169-182.
Ferrara P., Caflisch A..  2001.  Native topology or specific interactions: What is more important for protein folding? Journal of Molecular Biology. 306(4):837-850.
2000
Ferrara P., Apostolakis J., Caflisch A..  2000.  Computer simulations of protein folding by targeted molecular dynamics. Proteins: Structure, Function, and Bioinformatics. 39(3):252-260.
Ferrara P., Caflisch A..  2000.  Folding simulations of a three-stranded antiparallel β-sheet peptide. Proceedings of the National Academy of Sciences of the United States of America. 97(20):10780-10785.
Hiltpold A., Ferrara P., Gsponer J., Caflisch A..  2000.  Free energy surface of the helical peptide Y(MEARA)6. The Journal of Physical Chemistry B. 104(43):10080-10086.
Ferrara P., Apostolakis J., Caflisch A..  2000.  Targeted molecular dynamics simulations of protein unfolding. The Journal of Physical Chemistry B. 104(18):4511-4518.
Ferrara P., Apostolakis J., Caflisch A..  2000.  Thermodynamics and kinetics of folding of two model peptides investigated by molecular dynamics simulations. The Journal of Physical Chemistry B. 104(20):5000-5010.
1999
Apostolakis J., Ferrara P., Caflisch A..  1999.  Calculation of conformational transitions and barriers in solvated systems: Application to the alanine dipeptide in water. The Journal of Chemical Physics. 110(4):2099-2108.