Author
Keywords
Abstract

Armadillo repeat proteins are abundant eukaryotic proteins involved in several cellular processes, including signaling, transport, and cytoskeletal regulation. They are characterized by an armadillo domain, composed of tandem armadillo repeats of approximately 42 amino acids, which mediates interactions with peptides or parts of proteins in extended conformation. The conserved binding mode of the peptide in extended form, observed for different targets, makes armadillo repeat proteins attractive candidates for the generation of modular peptide-binding scaffolds. Taking advantage of the large number of repeat sequences available, a consensus-based approach combined with a force field-based optimization of the hydrophobic core was used to derive soluble, highly expressed, stable, monomeric designed proteins with improved characteristics compared to natural armadillo proteins. These sequences constitute the starting point for the generation of designed armadillo repeat protein libraries for the selection of peptide binders, exploiting their modular structure and their conserved binding mode.

Year of Publication
2008
Journal
Journal of Molecular Biology
Volume
376
Issue
5
Number of Pages
1282-1304
Date Published
2008 Mar 7
Type of Article
Research Article
ISSN Number
1089-8638
DOI
10.1016/j.jmb.2007.12.014
Alternate Journal
J. Mol. Biol.
PMID
18222472
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