Exner, V., Alexandre, C., Rosenfeldt, G., Alfarano, P., Nater, M., Caflisch, A., … Hennig, L. (2010). A gain-of-function mutation of Arabidopsis cryptochrome1 promotes flowering. Plant Physiology, 154(4), 1633-1645. https://doi.org/10.1104/pp.110.160895 (Original work published 2010)

Paoli, B., Pellarin, R., & Caflisch, A. (2010). Slow folding of cross-linked alpha-helical peptides due to steric hindrance. The Journal of Physical Chemistry B, 114(5), 2023-2027. https://doi.org/10.1021/jp910216j (Original work published)

Exner, V., Aichinger, E., Shu, H., Wildhaber, T., Alfarano, P., Caflisch, A., … Hennig, L. (2009). The chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 is essential for H3K27me3 binding and function during Arabidopsis development. PLoS One, 4(4), e5335. https://doi.org/10.1371/journal.pone.0005335 (Original work published 2009)

Guarnera, E., Pellarin, R., & Caflisch, A. (2009). How does a simplified-sequence protein fold? Biophys J, 97(6), 1737-1746. https://doi.org/10.1016/j.bpj.2009.06.047 (Original work published)

Su, X.-C., Ozawa, K., Yagi, H., Lim, S. P., Wen, D., Ekonomiuk, D., … Otting, G. (2009). NMR study of complexes between low molecular mass inhibitors and the West Nile virus NS2B-NS3 protease. FEBS Journal, 276(15), 4244-4255. https://doi.org/10.1111/j.1742-4658.2009.07132.x (Original work published 2009)

Schenker, P., Alfarano, P., Kolb, P., Caflisch, A., & Baici, A. (2008). A double-headed cathepsin B inhibitor devoid of warhead. Protein Science, 17(12), 2145-2155. https://doi.org/10.1110/ps.037341.108 (Original work published 2008)

Parmeggiani, F., Pellarin, R., Larsen, A. P., Varadamsetty, G., Stumpp, M. T., Zerbe, O., … Plückthun, A. (2008). Designed armadillo repeat proteins as general peptide-binding scaffolds: Consensus design and computational optimization of the hydrophobic core. Journal of Molecular Biology, 376(5), 1282-1304. https://doi.org/10.1016/j.jmb.2007.12.014 (Original work published)

Interlandi, G., Wetzel, S. K., Settanni, G., Plückthun, A., & Caflisch, A. (2008). Characterization and further stabilization of designed ankyrin repeat proteins by combining molecular dynamics simulations and experiments. Journal of Molecular Biology, 375(3), 837-854. https://doi.org/10.1016/j.jmb.2007.09.042 (Original work published)

Gorfe, A. A., & Caflisch, A. (2007). Ser170 controls the conformational multiplicity of the loop 166-175 in prion proteins: Implication for conversion and species barrier. FASEB J, 21(12), 3279-3287. https://doi.org/10.1096/fj.07-8292com (Original work published 2007)

Cecchini, M., Curcio, R., Pappalardo, M., Melki, R., & Caflisch, A. (2006). A molecular dynamics approach to the structural characterization of amyloid aggregation. Journal of Molecular Biology, 357(4), 1306-1321. https://doi.org/10.1016/j.jmb.2006.01.009 (Original work published)