Software List

Name Introduction Download times File name
SEED Program for docking libraries of fragments with solvation energy evaluation
publication Proteins: Struct. Funct. Genet 42, 256-268, 2001
manual		 380 seed_send_3.3.4.tgz
DAIM Decomposition And Identification of Molecules
publication J Med Chem. 14, 7384-7392, 2006
manual		 378 daim-5.3_send.tar.gz
FFLD Program for fragment-based flexible ligand docking
publication Biological Chemistry 382, 1365-1372, 2001
manual		 319 ffld_send_3.3.tgz
VLG Virtual Library Generator. Unpublished results.
manual		 280 VLG.tgz
GANDI Program for fragment-based de novo ligand design
publication J Chem Inf Model. 2008 Mar;48(3):679-90
manual		 396 gandi_v1.1.tgz
CAST Assignment of CHARMm atom types to molecules in MOL2 format with TAFF atom types 170 cast_v.0.1.tgz
Protein Biophysics (ibook) The lecture note of Protein Biophysics given by Amedeo Caflisch.
To use the ibook file, please download the file with your PC and use iTune to transfer the file to your ipad (using ibooks application).		 48 book.2.22.2012.ibooks

Please read the License Agreement carefully before submit the application of downloading access.

License Agreement

The recipient agrees not to disclose in any form either the delivered software package (package) or any modifications or derivative works based on the package to any third parties.

The recipient agrees that it will use the package solely for internal purposes.

The recipient agrees that any reports or publication of results obtained with the package will acknowledge its use by an appropriate citation. Until further notice this would refer to the package and to the relating papers of A. Caflisch group. The authors of the package or the University of Zurich make no warranties, either expressed or implied, as to the fitness of the program for any particular purpose, nor shall they be liable for any direct, indirect, or other damage resulting from use of the program. No particular support, service or update of the package is implied as part of the agreement. However technical contacts and advice are granted on a voluntary, friendly basis.

The source code will be provided upon request.

Sincerely yours,
Amedeo Caflisch

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