Author
Keywords
Abstract

By covalently linking an azobenzene photoswitch across the binding groove of a PDZ domain, a conformational transition, similar to the one occurring upon ligand binding to the unmodified domain, can be initiated on a picosecond timescale by a laser pulse. The protein structures have been characterized in the two photoswitch states through NMR spectroscopy and the transition between them through ultrafast IR spectroscopy and molecular dynamics simulations. The binding groove opens on a 100-ns timescale in a highly nonexponential manner, and the molecular dynamics simulations suggest that the process is governed by the rearrangement of the water network on the protein surface. We propose this rearrangement of the water network to be another possible mechanism of allostery.

Year of Publication
2013
Journal
Proceedings of the National Academy of Sciences of the United States of America
Volume
110
Issue
29
Number of Pages
11725-11730
Date Published
2013 Jul 16
Type of Article
Research Article
ISSN Number
1091-6490
DOI
10.1073/pnas.1306323110
Alternate Journal
Proc. Natl. Acad. Sci. U.S.A.
PMCID
PMC3718176
PMID
23818626
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