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Paoli, B., Seeber, M., Backus, E. H. G., Ihalainen, J. A., Hamm, P., & Caflisch, A. (2009). Bulky side chains and non-native salt bridges slow down the folding of a cross-linked helical peptide: A combined molecular dynamics and time-resolved infrared spectroscopy study. The Journal of Physical Chemistry B, 113(13), 4435-4442. https://doi.org/10.1021/jp810431s (Original work published)

Seeber, M., Cecchini, M., Rao, F., Settanni, G., & Caflisch, A. (2007). Wordom: A program for efficient analysis of molecular dynamics simulations. Bioinformatics, 23(19), 2625-2627. https://doi.org/10.1093/bioinformatics/btm378 (Original work published)

Seeber, M., Fanelli, F., Paci, E., & Caflisch, A. (2006). Sequential unfolding of individual helices of bacterioopsin observed in molecular dynamics simulations of extraction from the purple membrane. Biophysical Journal, 91(9), 3276-3284. https://doi.org/10.1529/biophysj.106.088591 (Original work published)

Cecchini, M., Rao, F., Seeber, M., & Caflisch, A. (2004). Replica exchange molecular dynamics simulations of amyloid peptide aggregation. Journal of Chemical Physics, 121(21), 10748-10756. https://doi.org/10.1063/1.1809588 (Original work published)