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Abstract

Novel ligands of the CREBBP bromodomain were identified by fragment-based docking. The in silico discovered hits have been optimized by chemical synthesis into selective nanomolar compounds, thereby preserving the ligand efficiency. The selectivity for the CREBBP bromodomain over other human bromodomain subfamilies has achieved by a benzoate moiety which was predicted by docking to be involved in favorable electrostatic interactions with the Arg1173 side chain, a prediction that could be verified a posteriori by the high-resolution crystal structure of the CREBBP bromodomain in complex with ligand 6 and also by MD simulations (see Xu , M. ; Unzue , A. ; Dong , J. ; Spiliotopoulos , D. ; Nevado , C. ; Caflisch , A. Discovery of CREBBP bromodomain inhibitors by high-throughput docking and hit optimization guided by molecular dynamics . J. Med. Chem. 2015 , DOI).

Year of Publication
2016
Journal
Journal of Medicinal Chemistry
Volume
59
Start Page
1350
Issue
4
Number of Pages
1350-1356
Date Published
2015 Jul 15
Type of Article
Research Article
ISSN Number
1520-4804
DOI
10.1021/acs.jmedchem.5b00172
Alternate Journal
J. Med. Chem.
PMID
26043365
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