Cocina, F., Vitalis, A., & Caflisch, A. (2020). SAPPHIRE-based clustering. Journal of Chemical Theory and Computation, 16(10), 6383–6396. https://doi.org/10.1021/acs.jctc.0c00604 (Original work published)

Bacci, M., Caflisch, A., & Vitalis, A. (2019). On the removal of initial state bias from simulation data. Journal of Chemical Physics, 150(10), 104105. https://doi.org/10.1063/1.5063556 (Original work published)

Bacci, M., Vymětal, J., Mihajlovic, M., Caflisch, A., & Vitalis, A. (2017). Amyloid β fibril elongation by monomers involves disorder at the tip. Journal of Chemical Theory and Computation, 13(10), 5117-5130. https://doi.org/10.1021/acs.jctc.7b00662 (Original work published)

Scalco, R., & Caflisch, A. (2012). Ultrametricity in protein folding dynamics. Journal of Chemical Theory and Computation, 8(5), 1580-1588. https://doi.org/10.1021/ct3000052