Bedi, R. K., & Caflisch, A. (2026). A DNA-Based Binding Assay for the m6A-RNA Reader Proteins. Chembiochem, 27(6), e202500897. https://doi.org/10.1002/cbic.202500897 (Original work published)

Huang, D., & Caflisch, A. (2010). Library screening by fragment-based docking. Journal of Molecular Recognition, 23(2), 183-193. https://doi.org/10.1002/jmr.981 (Original work published 2010)

Ekonomiuk, D., Su, X.-C., Ozawa, K., Bodenreider, C., Lim, S. P., Otting, G., … Caflisch, A. (2009). Flaviviral protease inhibitors identified by fragment-based library docking into a structure generated by molecular dynamics. Journal of Medicinal Chemistry, 52(15), 4860-4868. https://doi.org/10.1021/jm900448m (Original work published)

Ekonomiuk, D., & Caflisch, A. (2009). Activation of the West Nile virus NS3 protease: Molecular dynamics evidence for a conformational selection mechanism. Protein Science, 18(5), 1003-1111. https://doi.org/10.1002/pro.110 (Original work published 2009)

Zhou, T., Huang, D., & Caflisch, A. (2008). Is quantum mechanics necessary for predicting binding free energy? Journal of Medicinal Chemistry, 51(14), 4280-4288. https://doi.org/10.1021/jm800242q (Original work published)