Bedi, R. K., & Caflisch, A. (2026). A DNA-Based Binding Assay for the m6A-RNA Reader Proteins. Chembiochem, 27(6), e202500897. https://doi.org/10.1002/cbic.202500897 (Original work published)
Xiang, Y., Zhai, G., Li, Y., Wang, M., Chen, X., Wang, R., … Chen, L. (2023). Ginkgolic acids inhibit SARS-CoV-2 and its variants by blocking the spike protein/ACE2 interplay. International Journal of Biological Macromolecules, 226, 780-792. https://doi.org/10.1016/j.ijbiomac.2022.12.057 (Original work published)
Reichen, C., Hansen, S., Forzani, C., Honegger, A., Fleishman, S. J., Zhou, T., … Plückthun, A. (2016). Computationally designed armadillo repeat proteins for modular peptide recognition. Journal of Molecular Biology, 428(22), 4467-4489. https://doi.org/10.1016/j.jmb.2016.09.012 (Original work published)
Zhao, H., & Caflisch, A. (2014). Discovery of dual ZAP70 and Syk kinases inhibitors by docking into a rare C-helix-out conformation of Syk. Bioorganic & Medicinal Chemistry Letters, 24(6), 1523-1527. https://doi.org/10.1016/j.bmcl.2014.01.083 (Original work published)
Zhou, T., Georgeon, S., Moser, R., Moore, D. J., Caflisch, A., & Hantschel, O. (2014). Specificity and mechanism-of-action of the JAK2 tyrosine kinase inhibitors ruxolitinib and SAR302503 (TG101348). Leukemia, 28(2), 404-407. https://doi.org/10.1038/leu.2013.205 (Original work published 2014)
Zhao, H., & Caflisch, A. (2013). Discovery of ZAP70 inhibitors by high-throughput docking into a conformation of its kinase domain generated by molecular dynamics. Bioorganic & Medicinal Chemistry Letters, 23(20), 5721-5726. https://doi.org/10.1016/j.bmcl.2013.08.009 (Original work published)
Steiner, S., Magno, A., Huang, D., & Caflisch, A. (2013). Does bromodomain flexibility influence histone recognition? FEBS Letters, 587(14), 2158-2163. https://doi.org/10.1016/j.febslet.2013.05.032 (Original work published)
Lafleur, K., Dong, J., Huang, D., Caflisch, A., & Nevado, C. (2013). Optimization of inhibitors of the tyrosine kinase EphB4. 2. Cellular potency improvement and binding mode validation by X-ray crystallography. Journal of Medicinal Chemistry, 56(1), 84-96. https://doi.org/10.1021/jm301187e (Original work published)
Steiner, S., & Caflisch, A. (2012). Peptide binding to the PDZ3 domain by conformational selection. Proteins: Structure, Function, and Bioinformatics, 80(11), 2562-2572. https://doi.org/10.1002/prot.24137 (Original work published 2012)
Zhao, H., & Huang, D. (2011). Hydrogen bonding penalty upon ligand binding. PLoS One, 6(6), e19923. https://doi.org/10.1371/journal.pone.0019923 (Original work published)