@article{bibcite_96, keywords = {Models, Molecular, Thermodynamics, HIV Protease Inhibitors, Protein Binding, Amyloid Precursor Protein Secretases, Endopeptidases, HIV Protease, Protease Inhibitors, Static Electricity}, author = {D. Huang and A. Caflisch}, title = {Efficient evaluation of binding free energy using continuum electrostatics solvation}, abstract = {
The linear interaction energy (LIE) method is combined with energy minimization and finite-difference Poisson calculation of electrostatic solvation for the estimation of the absolute free energy of binding. A predictive accuracy of about 1.0 kcal/mol is obtained for 13 and 29 inhibitors of \β-secretase (BACE) and HIV-1 protease (HIV-1 PR), respectively. The multiplicative coefficients for the van der Waals and electrostatic terms are not transferable between BACE and HIV-1 PR although they are both aspartic proteases. The present approach is about 2 orders of magnitude faster than previous LIE methods and can be used for ranking large libraries of structurally diverse compounds docked by automatic computational tools.
}, year = {2004}, journal = {Journal of Medicinal Chemistry}, volume = {47}, pages = {5791-5797}, month = {2004 Nov 4}, issn = {0022-2623}, doi = {10.1021/jm049726m}, language = {eng}, }