@article{bibcite_311, keywords = {Protein Folding, molecular dynamics, Protein Engineering, Armadillo Domain Proteins, repeat proteins, spontaneous assembly}, author = {R. P. Watson and M. T. Christen and C. Ewald and F. Bumbak and C. Reichen and M. Mihajlovic and E. Schmidt and P. G{\"u}ntert and A. Caflisch and A. Pl{\"u}ckthun and O. Zerbe}, title = {Spontaneous self-assembly of engineered armadillo repeat protein fragments into a folded structure}, abstract = {

Repeat proteins are built of modules, each of which constitutes a structural motif. We have investigated whether fragments of a designed consensus armadillo repeat protein (ArmRP) recognize each other. We examined a split ArmRP consisting of an N-capping repeat (denoted Y), three internal repeats (M), and a C-capping repeat (A). We demonstrate that the C-terminal MA fragment adopts a fold similar to the corresponding part of the entire protein. In contrast, the N-terminal YM2 fragment constitutes a molten globule. The two fragments form a 1:1 YM2:MA complex with a nanomolar dissociation constant essentially identical to the crystal structure of the continuous YM3A protein. Molecular dynamics simulations show that the complex is structurally stable over a 1 \μs timescale and reveal the importance of hydrophobic contacts across the interface. We propose that the existence of a stable complex recapitulates possible intermediates in the early evolution of these repeat proteins.

}, year = {2014}, journal = {Structure}, volume = {22}, pages = {985-995}, month = {2014 Jul 8}, issn = {1878-4186}, doi = {10.1016/j.str.2014.05.002}, language = {eng}, }