Zhou, J., Assenza, S., Tatli, M., Tian, J., Ilie, I. M., Starostin, E., … Mezzenga, R. (2024). Hierarchical protofilament intertwining rules the formation of mixed-curvature amyloid polymorphs. Advanced Science, 11, e2402740. https://doi.org/10.1002/advs.202402740 (Original work published)

Ilie, I. M., Ehrhardt, C., Caflisch, A., & Weitz-Schmidt, G. (2023). Decrypting Integrins by mixed-solvent molecular dynamics simulations. Journal of Chemical Information and Modeling, 63, 3878–3891. https://doi.org/10.1021/acs.jcim.3c00480 (Original work published)

Dehabadi, M. H., Caflisch, A., Ilie, I. M., & Firouzi, R. (2022). Interactions of curcumin’s degradation products with the Aβ dimer: a computational study. The Journal of Physical Chemistry B, 126(39), 7627-7637. https://doi.org/10.1021/acs.jpcb.2c05846 (Original work published)

Ilie, I. M., & Caflisch, A. (2022). Antibody binding increases the flexibility of the prion protein. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1870(11-12). https://doi.org/10.1016/j.bbapap.2022.140827 (Original work published)

Ilie, I. M., Bacci, M., Vitalis, A., & Caflisch, A. (2022). Antibody binding modulates the dynamics of the membrane-bound prion protein. Biophysical Journal, 121(14), 2813-2825. https://doi.org/10.1016/j.bpj.2022.06.007 (Original work published)

García-Viñuales, S., Ilie, I. M., Santoro, A. M., Romanucci, V., Zarrelli, A., Di Fabio, G., … Milardi, D. (2022). Silybins inhibit human IAPP amyloid growth and toxicity through stereospecific interactions. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1870(5), 140772. https://doi.org/10.1016/j.bbapap.2022.140772 (Original work published)

Schilling, J., Jost, C., Ilie, I. M., Schnabl, J., Buechi, O., Eapen, R. S., … Forrer, P. (2022). Thermostable designed ankyrin repeat proteins (DARPins) as building blocks for innovative drugs. The Journal of Biological Chemistry, 298(1), 101403. https://doi.org/10.1016/j.jbc.2021.101403 (Original work published)

Nass, K. J., Ilie, I. M., Saller, M. J., Driessen, A. J. M., Caflisch, A., Kammerer, R. A., & Li, X. (2022). The role of the N-terminal amphipathic helix (N-AH) in bacterial YidC: Insights from functional studies, the crystal structure and molecular dynamics simulations. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1864(3), 183825. https://doi.org/10.1016/j.bbamem.2021.183825 (Original work published)

Mallona, I., Ilie, I. M., Karemaker, I. D., Butz, S., Manzo, M., Caflisch, A., & Baubec, T. (2021). Flanking sequence preference modulates de novo DNA methylation in the mouse genome. Nucleic Acids Research, 49(1), 145–157. https://doi.org/10.1093/nar/gkaa1168 (Original work published)

Ilie, I. M., & Caflisch, A. (2019). Simulation studies of amyloidogenic polypeptides and their aggregates. Chemical Reviews, 119(12), 6956-6993. https://doi.org/10.1021/acs.chemrev.8b00731 (Original work published)