First name
P.
Last name
Ferrara
Ferrara, P., Apostolakis, J., & Caflisch, A. (2002). Evaluation of a fast implicit solvent model for molecular dynamics simulations. Proteins: Structure, Function, and Bioinformatics, 46(1), 24-33. https://doi.org/10.1002/prot.10001 (Original work published)
Gorfe, A. A., Ferrara, P., Caflisch, A., Marti, D. N., Bosshard, H. R., & Jelesarov, I. (2002). Calculation of protein ionization equilibria with conformational sampling: pK<sub>a</sub> of a model leucine zipper, GCN4 and barnase. Proteins: Structure, Function, and Bioinformatics, 46(1), 41-60. https://doi.org/10.1002/prot.10027 (Original work published)
Cavalli, A., Ferrara, P., & Caflisch, A. (2002). Weak temperature dependence of the free energy surface and folding pathways of structured peptides. Proteins: Structure, Function, and Bioinformatics, 47(3), 305-314. https://doi.org/10.1002/prot.10041 (Original work published)
Gsponer, J., Ferrara, P., & Caflisch, A. (2001). Flexibility of the murine prion protein and its Asp178Asn mutant investigated by molecular dynamics simulations. Journal of Molecular Graphics and Modelling, 20(2), 169-182. https://doi.org/doi:10.1016/S1093-3263(01)00117-6 (Original work published 2001)
Ferrara, P., Apostolakis, J., & Caflisch, A. (2000). Targeted molecular dynamics simulations of protein unfolding. The Journal of Physical Chemistry B, 104(18), 4511-4518. https://doi.org/10.1021/jp9943878
Ferrara, P., Apostolakis, J., & Caflisch, A. (2000). Thermodynamics and kinetics of folding of two model peptides investigated by molecular dynamics simulations. The Journal of Physical Chemistry B, 104(20), 5000-5010. https://doi.org/10.1021/jp994157t
Hiltpold, A., Ferrara, P., Gsponer, J., & Caflisch, A. (2000). Free energy surface of the helical peptide Y(MEARA)<sub>6</sub> The Journal of Physical Chemistry B, 104(43), 10080-10086. https://doi.org/10.1021/jp002207k
Ferrara, P., Apostolakis, J., & Caflisch, A. (2000). Computer simulations of protein folding by targeted molecular dynamics. Proteins: Structure, Function, and Bioinformatics, 39(3), 252-260. https://doi.org/10.1002/(SICI)1097-0134(20000515)39:3<252::AID-PROT80>3.0.CO;2-3 (Original work published)
Apostolakis, J., Ferrara, P., & Caflisch, A. (1999). Calculation of conformational transitions and barriers in solvated systems: Application to the alanine dipeptide in water. The Journal of Chemical Physics, 110(4), 2099-2108. https://doi.org/doi:10.1063/1.477819
Ferrara, P., & Caflisch, A. (2000). Folding simulations of a three-stranded antiparallel β-sheet peptide. Proceedings of the National Academy of Sciences of the United States of America, 97(20), 10780-10785. https://doi.org/10.1073/pnas.190324897 (Original work published)