Budin, N., Majeux, N., Tenette-Souaille, C., & Caflisch, A. (2001). Structure-based ligand design by a build-up approach and genetic algorithm search in conformational space. Journal of Computational Chemistry, 22(16), 1956–1970. https://doi.org/10.1002/jcc.1145

Budin, N., Ahmed, S., Majeux, N., & Caflisch, A. (2001). An evolutionary approach for structure-based design of natural and non-natural peptidic ligands. Combinatorial Chemistry & High Throughput Screening, 4(8), 661-673. https://doi.org/10.2174/1386207013330652 (Original work published 2001)

Majeux, N., Scarsi, M., & Caflisch, A. (2001). Efficient electrostatic solvation model for protein-fragment docking. Proteins: Structure, Function, and Bioinformatics, 42(2), 256-268. https://doi.org/DOI: 10.1002/1097-0134(20010201)42:2<256::AID-PROT130>3.0.CO;2-4 (Original work published)

Ahmed, S., Majeux, N., & Caflisch, A. (2001). Hydrophobicity and functionality maps of farnesyltransferase. Journal of Molecular Graphics and Modelling, 19(3-4), 307-317. https://doi.org/doi:10.1016/S1093-3263(00)00075-9

Budin, N., Majeux, N., & Caflisch, A. (2001). Fragment-based flexible ligand docking by evolutionary optimization. Biological Chemistry, 382(9), 1365-1372. https://doi.org/10.1515/BC.2001.168 (Original work published 2001)

Majeux, N., Scarsi, M., Tenette-Souaille, C., & Caflisch, A. (2002). Hydrophobicity maps and docking of molecular fragments with solvation. In G. Klebe (Ed.), Virtual Screening: An Alternative or Complement to High Throughput Screening? (Vol. 20, pp. 145-169). Dordrecht: Springer Netherlands. https://doi.org/10.1007/0-306-46883-2_9

Majeux, N., Scarsi, M., Apostolakis, J., Ehrhardt, C., & Caflisch, A. (1999). Exhaustive docking of molecular fragments with electrostatic solvation. Proteins: Structure, Function, and Bioinformatics, 37(1), 88-105. (Original work published)

Scarsi, M., Majeux, N., & Caflisch, A. (1999). Hydrophobicity at the surface of proteins. Proteins: Structure, Function, and Bioinformatics, 37(4), 565-755. (Original work published)

Haberthür, U., Majeux, N., Werner, P., & Caflisch, A. (2003). Efficient evaluation of the effective dielectric function of a macromolecule in aqueous solution. Journal of Computational Chemistry, 24(15), 1936-1949. https://doi.org/10.1002/jcc.10317 (Original work published)

Cecchini, M., Kolb, P., Majeux, N., & Caflisch, A. (2004). Automated docking of highly flexible ligands by genetic algorithms: A critical assessment. Journal of Computational Chemistry, 25(3), 412-422. https://doi.org/10.1002/jcc.10384 (Original work published 2004)