Friedman, R., & Caflisch, A. (2014). Wild type and mutants of the HET-s(218-289) prion show different flexibility at fibrillar ends: A simulation study. Proteins: Structure, Function, and Bioinformatics, 82(3), 399-404. https://doi.org/10.1002/prot.24402 (Original work published 2014)

Friedman, R., Pellarin, R., & Caflisch, A. (2010). Soluble protofibrils as metastable intermediates in simulations of amyloid fibril degradation induced by lipid vesicles. The Journal of Physical Chemistry Letters, 1(2), 471-474. https://doi.org/10.1021/jz900318t

Friedman, R., & Caflisch, A. (2011). Surfactant effects on amyloid aggregation kinetics. Journal of Molecular Biology, 414(2), 303-312. https://doi.org/10.1016/j.jmb.2011.10.011 (Original work published)

Seeber, M., Felline, A., Raimondi, F., Muff, S., Friedman, R., Rao, F., … Fanelli, F. (2011). Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces. Journal of Computational Chemistry, 32(6), 1183-1194. https://doi.org/10.1002/jcc.21688 (Original work published)

Friedman, R., & Caflisch, A. (2010). On the orientation of the catalytic dyad in aspartic proteases. Proteins, 78(6), 1575-1582. https://doi.org/10.1002/prot.22674 (Original work published)

Friedman, R., & Caflisch, A. (2009). Discovery of plasmepsin inhibitors by fragment-based docking and consensus scoring. ChemMedChem, 4(8), 1317-1326. https://doi.org/10.1002/cmdc.200900078 (Original work published 2009)

Friedman, R., Pellarin, R., & Caflisch, A. (2009). Amyloid aggregation on lipid bilayers and its impact on membrane permeability. J. Mol. Biol., 387(2), 407-415. https://doi.org/10.1016/j.jmb.2008.12.036 (Original work published)

Friedman, R., & Caflisch, A. (2008). Pepsinogen-like activation intermediate of plasmepsin II revealed by molecular dynamics analysis. Proteins: Structure, Function, and Bioinformatics, 73(4), 814-827. https://doi.org/10.1002/prot.22105 (Original work published 2008)

Friedman, R., & Caflisch, A. (2007). The protonation state of the catalytic aspartates in plasmepsin II. FEBS Letters, 581(21), 4120-4124. https://doi.org/10.1016/j.febslet.2007.07.033 (Original work published)